Publications (PDFs)

Petkova MD, Tkacik G, Bialek W, Wieschaus EF, Gregor T (2019). Optimal decoding of cellular identities in a genetic networkCell 176(4), 844–855.

Zoller B, Little SC, Gregor T (2018). Diverse Spatial Expression Patterns Emerge from Unified Kinetics of Transcriptional Bursting Cell 175(3), 835–847.

Chen H, Levo M, Barinov L, Fujioka M, Jaynes JB, Gregor T (2018). Dynamic interplay between enhancer-promoter topology and gene activity. Nature Genetics 50, 1296–1303.

Little SC, Gregor T (2018). Single mRNA Molecule Detection in Drosophila. In: Gaspar I. (eds) RNA Detection. Methods in Molecular Biology, vol 1649. Humana Press, New York, NY

Garcia HG, Gregor T (2018). Live Imaging of mRNA Synthesis in Drosophila. In: Gaspar I. (eds) RNA Detection. Methods in Molecular Biology, vol 1649. Humana Press, New York, NY

Gregor T (2017). Beyond D’Arcy Thompson: Future challenges for quantitative biology. Mechanisms of Development 145: 10–12.

Tikhonov M, Little SC, Gregor T (2015). Only accessible information is useful: insights from gradient-mediated patterning. Roy. Soc. Open Sci. 2: 150486.

Bothma JP, Garcia HG, Ng S, Perry MW, Gregor T, Levine MS (2015). Enhancer additivity and non-additivity are determined by enhancer strength in the Drosophila embryo. eLife 2015; 4: e07956.

Noorbakhsh J, Schwab DJ, Sgro AE, Gregor T, Mehta P (2015). Modeling oscillations and spiral waves in Dictyostelium populations. Physical Review E 91: 062711; [qbio.CB].

Sgro AE, Schwab DJ, Noorbakhsh J, Mestler T, Mehta P, Gregor T (2015). From Intracellular Signaling to Population Oscillations: Bridging Size and Time Scales in Collective BehaviorMolecular Systems Biology 11: 799.

Tkačik G, Dubuis JO, Petkova MD, Gregor T (2015). Positional information, positional error, and read-out precision in morphogenesis: a mathematical framework. Genetics 199 (1): 39–59.

Gregor T, Garcia HG, Little SC (2014). The embryo as a laboratory: quantifying transcription in Drosophila. Trends in Genetics 30 (8): 364–375.

Bothma JP, Garcia HG, Esposito E, Schlissel G, Gregor T, Levine MS (2014). Dynamic regulation of Eve Stripe 2 expression reveals transcriptional bursts in living Drosophila embryos. Proceedings of the National Academy of Science 111 (29): 10598–10603.

Abouchar L, Petkova MD, Steinhardt CR, Gregor T (2014). Fly wing vein patterns have spatial reproducibility of a single cell. J. Roy. Soc. Interface 11 (97): 20140443.

Petkova MD, Little SC, Liu F, Gregor T (2014). Maternal origins of developmental reproducibility. Current Biology 24 (11): 1283–1288. (For original, pre-peer review version see: [q-bio.MN]).

Krotov D, Dubuis JO, Gregor T, Bialek W (2014). Morphogenesis at criticalityProceedings of the National Academy of Science 111 (10): 3683–3688.

Garcia HG, Tikhonov M, Lin A, Gregor T (2013). Quantitative imaging of transcription in living Drosophila embryos links polymerase activity to patterning. Current Biology 23 (21): 2140–2145.

Abouchar L, Petkova MD, Steinhardt CR, Gregor T (2013). Precision and reproducibility of macroscopic developmental patterns. [q-bio.TO].

Dubuis JO, Tkačik G, Wieschaus EF, Gregor T, Bialek W (2013). Positional information, in bits. Proceedings of the National Academy of Science 110 (41): 16301–16308.

Little SC, Tikhonov M, Gregor T (2013). Precise developmental gene expression arises from globally stochastic transcriptional activity. Cell 154(4): 789–800.

Little SC, Gregor T (2013). Sorting sloppy Sonic. Cell 153 (3): 509.

Liu F, Morrison AH, Gregor T (2013). Dynamic interpretation of maternal inputs by the Drosophila segmentation gene networkProceedings of the National Academy of Science 110 (17): 6724–6729.

Dubuis JO, Samanta R, Gregor T (2013). Accurate measurements of dynamics and reproducibility in small genetic networksMolecular Systems Biology 9: 639.

Morrison AH, Scheeler M, Dubuis JO, Gregor T (2012). Quantifying the Bicoid morphogen gradient in living fly embryosCold Spring Harb Protoc. 2012 (4): 398–406.

Little SC, Tkačik G, Kneeland T, Wieschaus EF, Gregor T (2011). The formation of the Bicoid morphogen gradient requires protein movement from anteriorily localized mRNAPLoS Biology 9 (3), e1000596.

Mehta P, Gregor T (2010). Approaching the molecular origins of collective dynamics in oscillating cell populationsCurrent Opinion in Genetics and Development 20 (6).

Gregor T, Fujimoto K, Masaki N, Sawai S (2010). The onset of collective behavior in social amoebaeScience 328: 1021–1026.

Bialek W, Gregor T, Tank DW, Wieschaus EF (2008). Can we fit all of the data? Cell 132: 17–18.

Gregor T, McGregor AP, Wieschaus EF (2008) Shape and function of the Bicoid morphogen gradient in dipteran species with different sized embryosDevelopmental Biology 316: 350–358.

Tkačik G, Gregor T, Bialek W (2008). The role of input noise in transcriptional regulationPLoS One 3, e2774.

Gregor T, Wieschaus EF, Tank DW, Bialek W (2007). Probing the limits to positional informationCell 130: 153–164.

Gregor T, Wieschaus EF, McGregor AP, Bialek W, Tank DW (2007). Stability and nuclear dynamics of the Bicoid morphogen gradientCell 130: 141–152.

Gregor T, Bialek W, deRuyter van Steveninck RR, Tank DW, Wieschaus EF (2005). Diffusion and scaling during early embryonic pattern formationProceedings of the National Academy of Science 102: 18403–18407.

Gregor T, Car R (2005). Minimization of the potential energy surface of Lennard-Jones clusters by quantum optimizationChem. Phys. Lett. 412: 125–130.

Gregor T, Mauri F, Car R (1999). A comparison of methods for the calculation of NMR chemical shiftsJ. Chem. Phys. 111: 1815–1822.