Archive for November, 2008

Classic papers on signaling and aggregation of amoebae

Over the next few months/years I’d like to use this website to build up a repository of information on the various topics that we study in the lab. Today as a beginning I am introducing 4 classic papers that pioneered a system-level description and quantitative understanding of this spectacular phenomenon:

In this movie roughly 200 starved amoebae of the species Dictyostelium discoideum are shown over 8 hours during which they find each other and culminate in a cellular slime mould. This process is seen as a survival strategy because individual amoebae would die under starvation whereas as in the multi-cellular organism 80% of the cells can survive as spores. (more…)

General Introduction

Traditionally, biological questions have been investigated with qualitative techniques that allow for interpretation classically in the context of evolution. This qualitative approach, however, struggles to adequately describe the dynamic nature of most of the essential biological processes upon which evolution is acting. Recent advances in molecular biology, optical microscopy, nanoscopic physics and computer science have opened up new avenues for interpreting biological phenomena, combining high-precision measurement of biological processes with theoretical predictions and models that are bound by physical principles and formulated in mathematical language. This allows for models to be numerically tested and validated by experiments and, conversely, for experiments to be designed and guided by theoretical models. My laboratory uses such an approach to understand a biological system holistically, within a framework of fundamental physical principles that dictate and constrain biological phenomena.

Research in the lab is highly interdisciplinary. The interests and expertise of the lab’s members range from physics to biology to computer science to engineering; we use a combination of computational and experimental approaches. We build microscopes and microfluidic devices to measure the concentrations dynamics of proteins and signaling molecules; we use tools from molecular biology and genetics to manipulate the organisms we study; and we use image analysis and modeling to analyze our data. Researchers are encouraged to move freely between the different disciplines and to learn a variety of techniques according to their specific needs and interests. We primarily address questions concerning the development of fruit fly embryos and emergent collective behavior via cell signaling in social amoeba populations, but we are open to new ideas and collaborations addressing questions in other model systems.

Introduction to early embryonic fruit fly development

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Introduction to social amoebae and their development

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Introduction to early mammalian development

The laboratory is currently in the process to develop new in utero imaging techniques for early embryonic mouse development.

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Architectural Lab Drawings Finished

The architectural drawings for the new lab are finally done.

Here is a sneak preview:

About the tools we use

For starters, some images:

Laser Scanning Two-Photon Microscope

Laser Scanning Two-Photon Microscope

Detail of a custom built Two-Photon Microscope

Illustration of custom-built two-photon microscope with trans- and epi-detection (also note embryo in special holder).

Illustration of custom-built two-photon microscope with trans- and epi-detection (also note embryo in special holder).

A few specific research projects…

A large part of my research focus will be a continuation of my previous work and collaborations, both here at Princeton and in Tokyo. However, below are three areas into which I intend to expand research in the lab. These areas should only be seen as examples, and I am open to a number of other projects and collaborations.

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Can we fit all of the data?

W. Bialek, T. Gregor, D.W. Tank, E.F. Wieschaus, Cell 132, 17-18 (2008).

Shape and function of the Bicoid morphogen gradient in dipteran species with different sized embryos.

T. Gregor, A. P. McGregor, E. F. Wieschaus, Dev. Biol. 316, 350-358 (2008).